All functions
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Projects
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MOAS Projects |
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Sites
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MOAS sites |
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add_lcbc_logo()
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Add LCBC logo to plot |
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anonymize_moas()
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Anonymise the MOAS |
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baseCols
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MOAS base columns |
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check_tp()
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Check subject timepoint |
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clean_DF()
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Cleans data from SPSS into a data.frame |
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data
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MOAS mock example data |
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dbs_add()
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Add DBS data to data frame |
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dbs_get()
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Get DBS information from a file |
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deselect_sensitive()
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Deselect sensitive columns |
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docs_paradigm_order_chapter()
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Order the chapters of the Paradigm documentation |
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docs_paradigm_page()
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Create new chapter for the Paradigm documentation |
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docs_project_order_chapter()
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Order the chapters of the Paradigm documentation |
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docs_project_page()
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Create new chapter for the Project documentation |
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epigen_add()
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Add epigenetic data to MOAS like data |
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epigen_get()
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Get epigenetic data |
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filter_site()
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Utility function for reducing double/triple scans to a single row |
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filter_trainingexposed()
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Filter out when a participant has trained |
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fix_dups()
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NA replacement in duplicated columns |
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fs_lmm()
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Create a data.frame that is ready for use in Freesufers linear
mixed models |
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inbody_add()
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Add InBody data to data |
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inbody_add_all()
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Add all InBody data from folder to data |
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inbody_get()
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Get InBody data |
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inbody_get_all()
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Get all Inbody data from folder |
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inbody_read()
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Read InBody data |
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launch_LCBCshiny()
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Function to launch the LCBC shiny data explorer |
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launch_check_tp()
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Launch shiny app to find subject timepoint |
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lcbc_cols()
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Function to extract lcbc colors as hex codes |
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lcbc_logo_grob()
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LCBC logo graphics object |
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lcbc_pal()
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Return function to interpolate a lcbc color palette |
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mutate_ages()
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Calculates ages based on birthdates and test/MRI dates |
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mutate_mean_date()
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Calculate or infer the mean data for
data collected |
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mutate_sensitive()
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Alter sensitive columns to make them less sensitive |
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na_col_rm()
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Utility function to remove columns with no data |
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pgs_add()
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Add PGS data to the MOAS |
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pgs_add_all()
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Add all PGS data to the MOAS |
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pgs_add_single()
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Add single PGS data to the MOAS |
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pgs_get()
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Read in and sort PGS data |
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pgs_get_all()
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Get all PGS's |
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pgs_get_single()
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Read in and sort a single PGS profile |
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pgs_read()
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Read in a PGS file |
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project_cols()
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Function to extract project colors as hex codes |
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project_pal()
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Return function to interpolate a project color palette |
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scale_color_lcbc()
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Color scale constructor for lcbc colors |
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scale_color_proj()
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Color scale constructor for proj colors |
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scale_colour_lcbc()
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Colour scale constructor for lcbc colors |
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scale_colour_proj()
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Colour scale constructor for proj colors |
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scale_fill_lcbc()
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Fill scale constructor for lcbc colors |
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scale_fill_proj()
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Fill scale constructor for proj colors |
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select_sensitive()
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Select sensitive columns |
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site_keeper()
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Deprecated, use filter_site |
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theme_lcbc()
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ggplot minimal theme for lcbc |
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theme_lcbc_dark()
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ggplot minimal theme for lcbc |
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theme_lcbc_dark_grid()
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ggplot dark theme for lcbc |
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theme_lcbc_dark_void()
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ggplot minimal theme for lcbc |
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theme_lcbc_grid()
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ggplot theme for lcbc |
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theme_lcbc_void()
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ggplot minimal theme for lcbc |
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tsdify()
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Creates TSD folder names for MRI data location, or
project wave from TSD folder names |
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variables
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MOAS variables |
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widen()
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Widen the MOAS data.frame |