This package contains extra atlases for the use in the ggseg plotting package in R.
There are currently 19 available atlases across 10 packages. The packages, their repository name and location can be found with:
library(ggsegExtra) # List all verified compatible atlases ggseg_atlas_repos() #> # A tibble: 10 x 5 #> repo ggseg ggseg3d source comment #> <chr> <lgl> <lgl> <chr> <chr> #> 1 LCBC-UiO/ggsegYeo2… TRUE TRUE github both 17 and 7 Network data #> 2 LCBC-UiO/ggsegDest… FALSE TRUE github the 2009 atlas #> 3 LCBC-UiO/ggsegChen FALSE TRUE github both thickness and area maps #> 4 LCBC-UiO/ggsegScha… FALSE TRUE github both 17 and 7 networks #> 5 LCBC-UiO/ggsegGlas… TRUE TRUE github full atlas #> 6 LCBC-UiO/ggsegJHU TRUE TRUE github white tract atlas #> 7 LCBC-UiO/ggsegTrac… TRUE TRUE github white tract atlas #> 8 LCBC-UiO/ggsegICBM FALSE TRUE github white tract atlas #> 9 LCBC-UiO/ggsegHO TRUE FALSE github Harvard-Oxford cortical (FSL) #> 10 LCBC-UiO/ggsegDefa… TRUE FALSE github extra 2d view for dk, p/a division …
We have two tutorials on how to make atlases available in the package documentation page. Currently, the pipeline for making 3d atlases is complete given Freesufer is installed on your system and you have a ready
.annot file to use for the converions. Creating 2d atlases is currently still a work in progress, and we are not able to provide a better solution than the one described at the moment. We hope to remedy this in the near future.
Please note that the ggsegExtra project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
Don’t hesitate to ask for support using github issues, or requesting new atlases. While we would love getting help in creating new atlases, you may also request atlases through the issues, and we will try to get to it.